OBO Foundry dashboard analysis¶

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/tmp/ipykernel_5027/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

Turtle                   30
RDF/XML Syntax           29
unknown                   2
OWL/XML Syntax            1
OWL Functional Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
Declaration 61 1133.539683 3162.809209 0.0 95.5 410.0 885.0 22818.0
AnnotationAssertion 60 5426.269841 19607.616915 0.0 182.0 678.0 2226.0 124680.0
SubClassOf 59 1353.634921 4263.533887 0.0 26.0 288.0 880.0 24611.0
ObjectPropertyRange 54 41.714286 70.311847 0.0 11.0 25.0 53.0 520.0
ObjectPropertyDomain 53 39.936508 70.386691 0.0 8.0 22.0 53.0 517.0
DataPropertyRange 48 13.301587 26.648631 0.0 1.0 5.0 11.0 170.0
SubObjectPropertyOf 47 55.444444 103.189894 0.0 0.5 26.0 60.0 709.0
DataPropertyDomain 44 13.396825 36.801797 0.0 0.0 2.0 7.0 235.0
InverseObjectProperties 44 13.301587 24.258444 0.0 0.0 3.0 15.5 128.0
ClassAssertion 43 156.571429 516.126445 0.0 0.0 2.0 20.5 3053.0
DisjointClasses 43 211.873016 1545.428279 0.0 0.0 3.0 18.5 12277.0
EquivalentClasses 38 142.301587 774.187829 0.0 0.0 7.0 64.5 6154.0
SubDataPropertyOf 33 9.126984 31.605681 0.0 0.0 1.0 7.0 242.0
TransitiveObjectProperty 31 4.142857 7.521704 0.0 0.0 0.0 5.0 38.0
SubAnnotationPropertyOf 31 12.301587 32.269348 0.0 0.0 0.0 12.0 228.0
FunctionalObjectProperty 30 2.873016 4.506240 0.0 0.0 0.0 4.0 18.0
FunctionalDataProperty 25 2.015873 4.917028 0.0 0.0 0.0 2.0 26.0
InverseFunctionalObjectProperty 23 1.523810 2.734824 0.0 0.0 0.0 1.0 12.0
AnnotationPropertyRangeOf 23 5.730159 17.927458 0.0 0.0 0.0 2.0 134.0
SymmetricObjectProperty 21 3.126984 6.783500 0.0 0.0 0.0 3.0 35.0
IrrefexiveObjectProperty 20 3.238095 6.697892 0.0 0.0 0.0 1.0 24.0
ObjectPropertyAssertion 19 360.968254 1646.268214 0.0 0.0 0.0 2.5 10226.0
AsymmetricObjectProperty 18 2.793651 5.828624 0.0 0.0 0.0 1.0 20.0
DataPropertyAssertion 15 123.095238 515.794618 0.0 0.0 0.0 0.0 3617.0
DisjointUnion 14 8.015873 20.825304 0.0 0.0 0.0 0.0 116.0
SubPropertyChainOf 13 4.126984 17.113937 0.0 0.0 0.0 0.0 120.0
ReflexiveObjectProperty 9 0.190476 0.534522 0.0 0.0 0.0 0.0 3.0
EquivalentObjectProperties 9 1.238095 4.855042 0.0 0.0 0.0 0.0 36.0
AnnotationPropertyDomain 8 0.222222 0.831719 0.0 0.0 0.0 0.0 6.0
DifferentIndividuals 7 0.730159 3.365893 0.0 0.0 0.0 0.0 25.0
DisjointObjectProperties 6 0.333333 1.448024 0.0 0.0 0.0 0.0 10.0
Rule 5 0.666667 3.364904 0.0 0.0 0.0 0.0 25.0
SameIndividual 3 2.095238 14.889609 0.0 0.0 0.0 0.0 118.0
NegativeObjectPropertyAssertion 2 0.031746 0.176731 0.0 0.0 0.0 0.0 1.0
EquivalentDataProperties 2 0.238095 1.399473 0.0 0.0 0.0 0.0 10.0
DatatypeDefinition 2 0.317460 2.395058 0.0 0.0 0.0 0.0 19.0
DisjointDataProperties 1 0.031746 0.251976 0.0 0.0 0.0 0.0 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 61 4734.222222 13615.199795 0.0 210.5 1142.0 2922.0 78659.0
ObjectUnionOf 42 14.666667 22.114803 0.0 0.0 5.0 13.5 88.0
ObjectAllValuesFrom 38 26.507937 57.694656 0.0 0.0 5.0 39.0 400.0
ObjectSomeValuesFrom 37 377.777778 2098.698563 0.0 0.0 7.0 98.0 16630.0
ObjectIntersectionOf 32 124.587302 783.906834 0.0 0.0 1.0 17.0 6224.0
ObjectExactCardinality 29 6.206349 17.673708 0.0 0.0 0.0 5.0 115.0
DataExactCardinality 25 2.571429 4.309458 0.0 0.0 0.0 3.0 18.0
DataAllValuesFrom 20 1.000000 1.849150 0.0 0.0 0.0 2.0 9.0
DataHasValue 19 28.873016 74.990643 0.0 0.0 0.0 4.0 494.0
ObjectComplementOf 19 5.301587 23.026377 0.0 0.0 0.0 3.5 179.0
DataSomeValuesFrom 18 1.936508 5.108099 0.0 0.0 0.0 2.0 33.0
ObjectHasValue 17 11.888889 40.442756 0.0 0.0 0.0 1.0 211.0
ObjectMinCardinality 15 1.460317 4.453434 0.0 0.0 0.0 0.0 28.0
ObjectMaxCardinality 13 15.031746 112.596048 0.0 0.0 0.0 0.0 894.0
ObjectOneOf 11 11.952381 52.340827 0.0 0.0 0.0 0.0 275.0
DataMaxCardinality 6 1.634921 8.211521 0.0 0.0 0.0 0.0 62.0
DataMinCardinality 5 0.285714 1.772811 0.0 0.0 0.0 0.0 14.0
ObjectHasSelf 1 0.015873 0.125988 0.0 0.0 0.0 0.0 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
36 PATO 0.342 0.556 0.127
38 PROVO 0.340 0.504 0.175
17 FOAF 0.333 0.333 0.333
31 OBO 0.333 0.571 0.095
19 IAO 0.300 0.600 0.000
32 OEO 0.285 0.571 0.000
22 MDO 0.285 0.571 0.000
0 AMONTOLOGY 0.285 0.571 0.000
50 enanomapper 0.285 0.571 0.000
8 EMMO 0.275 0.549 0.000
27 MaterialsMine 0.275 0.549 0.000
39 QUDT 0.275 0.549 0.000
4 CHAMEO 0.275 0.549 0.000
37 PMDCO 0.275 0.549 0.000
13 EMMO_crystallography 0.275 0.549 0.000
11 EMMO_Datamodel 0.264 0.527 0.000
15 EMMO_mechanical_testing 0.264 0.527 0.000
3 CCO 0.252 0.504 0.000
26 MatOnto 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
12 EMMO_atomistic 0.252 0.504 0.000
1 BWMD-DOMAIN 0.252 0.504 0.000
2 BWMD-MID 0.252 0.504 0.000
10 EMMO_BattINFO 0.252 0.504 0.000
42 SEMMD 0.252 0.504 0.000
51 m4i 0.241 0.482 0.000
41 SAREF 0.241 0.482 0.000
44 SO 0.234 0.467 0.000
21 MAMBO 0.234 0.467 0.000
47 UO 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
45 SP 0.234 0.467 0.000
33 OM 0.234 0.467 0.000
16 EMMO_microstructure 0.234 0.467 0.000
28 NPO 0.234 0.467 0.000
57 nfdicore 0.222 0.444 0.000
25 MSEO 0.222 0.444 0.000
52 mat 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
30 OA 0.222 0.444 0.000
55 mvc 0.222 0.444 0.000
29 NanoMine 0.222 0.444 0.000
5 CIF-core 0.222 0.444 0.000
18 GPO 0.222 0.444 0.000
9 EMMO_BVC 0.222 0.444 0.000
20 LPBFO 0.219 0.438 0.000
24 MOL_TENSILE 0.208 0.416 0.000
59 opmw 0.200 0.400 0.000
48 WILD 0.200 0.400 0.000
35 P-Plan 0.200 0.400 0.000
60 periodictable 0.200 0.400 0.000
23 MOL_BRINELL 0.189 0.378 0.000
49 bmo 0.189 0.378 0.000
56 mwo 0.189 0.378 0.000
46 SSN 0.189 0.378 0.000
34 OSMO 0.189 0.378 0.000
40 QUDV 0.167 0.333 0.000
53 matinfo 0.167 0.333 0.000
61 ssos 0.155 0.311 0.000
58 ontorule 0.155 0.311 0.000
54 metal-alloy 0.000 0.000 0.000
62 vimmp 0.000 0.000 0.000
43 SKOS_MDO 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 63.0 0.228127 0.066294 0.0 0.204 0.234 0.264 0.342
score_dash 63.0 0.444444 0.122544 0.0 0.400 0.467 0.504 0.600
score_impact 63.0 0.011587 0.050515 0.0 0.000 0.000 0.000 0.333

OBO dependency graph